Volume 90(4); 2024 Apr
Articles from this journal are generally available in PMC after a 6-month delay (embargo); however, the delay may vary at the discretion of the publisher.
Spotlight
Articles of Significant Interest in This Issue
Appl Environ Microbiol. 2024 Apr; 90(4): e00664-24. Published online 2024 Apr 17. doi: 10.1128/aem.00664-24
Currently embargoed: Free in PMC on Oct 17, 2024;
PubMedMinireviews
Miao Hu, Colin Scott
Appl Environ Microbiol. 2024 Apr; 90(4): e00157-24. Published online 2024 Mar 13. doi: 10.1128/aem.00157-24
Sulfate-reducing bacteria unearthed: ecological functions of the diverse prokaryotic group in terrestrial environments
Konstantin A. Demin, Evgeniya V. Prazdnova, Tatiana M. Minkina, Andrey V. Gorovtsov
Appl Environ Microbiol. 2024 Apr; 90(4): e01390-23. Published online 2024 Mar 29. doi: 10.1128/aem.01390-23
Currently embargoed: Free in PMC on Sep 29, 2024;
PubMedGenetics and Molecular Biology
Combining CRISPR/Cas9 and natural excision for the precise and complete removal of mobile genetic elements in bacteria
Pengxia Wang, Xiaofei Du, Yi Zhao, Weiquan Wang, Tongxuan Cai, Kaihao Tang, Xiaoxue Wang
Appl Environ Microbiol. 2024 Apr; 90(4): e00095-24. Published online 2024 Mar 18. doi: 10.1128/aem.00095-24
Currently embargoed: Free in PMC on Sep 18, 2024;
PubMedDevelopment of a genetic system for Haloferax gibbonsii LR2-5, model host for haloarchaeal viruses
Colin Tittes, Jeroen Nijland, Anna M. C. Schoentag, Thomas Hackl, Nadia Di Cianni, Anita Marchfelder, Tessa E. F. Quax
Appl Environ Microbiol. 2024 Apr; 90(4): e00129-24. Published online 2024 Mar 12. doi: 10.1128/aem.00129-24
Currently embargoed: Free in PMC on Sep 12, 2024;
PubMedNiklas Hirth, Nicole Wiesemann, Stephanie Krüger, Michelle-Sophie Gerlach, Kilian Preußner, Diana Galea, Martin Herzberg, Cornelia Große, Dietrich H. Nies
Appl Environ Microbiol. 2024 Apr; 90(4): e00146-24. Published online 2024 Apr 1. doi: 10.1128/aem.00146-24
Protein disulfide isomerase 1 is required for RodA assembling-based conidial hydrophobicity of Aspergillus fumigatus
Xiaotao Hu, Yao Zhou, Renning Liu, Jing Wang, Lingyan Guo, Xiaofei Huang, Jingyi Li, Yunfeng Yan, Feiyun Liu, Xueying Li, Xinyu Tan, Yiqing Luo, Ping Wang, Shengmin Zhou
Appl Environ Microbiol. 2024 Apr; 90(4): e01260-23. Published online 2024 Mar 19. doi: 10.1128/aem.01260-23
Currently embargoed: Free in PMC on Sep 19, 2024;
PubMedYamei Wang, Jialu Fan, Zhengyu Zhou, Gustavo H. Goldman, Ling Lu, Yuanwei Zhang
Appl Environ Microbiol. 2024 Apr; 90(4): e01885-23. Published online 2024 Mar 7. doi: 10.1128/aem.01885-23
Efficient markerless genetic manipulation of Pasteurella multocida using lacZ and pheSm as selection markers
Jinfei Jiang, Yishan Zhao, Aihua Chen, Juan Sun, Mengruo Zhou, Jialian Hu, Xuewei Cao, Ning Dai, Zhaoping Liang, Saixiang Feng
Appl Environ Microbiol. 2024 Apr; 90(4): e02043-23. Published online 2024 Mar 28. doi: 10.1128/aem.02043-23
Currently embargoed: Free in PMC on Sep 28, 2024;
PubMedBiotechnology
Conditional expression of FumA in Aspergillus niger enhances synthesis of L-malic acid
Chi Zhang, Man Shi, Yingyan Xu, Dongdong Yang, Ling Lu, Feng Xue, Qing Xu
Appl Environ Microbiol. 2024 Apr; 90(4): e00008-24. Published online 2024 Mar 20. doi: 10.1128/aem.00008-24
Currently embargoed: Free in PMC on Sep 20, 2024;
PubMedAn NADH/NAD+-favored aldo-keto reductase facilitates avilamycin A biosynthesis by primarily catalyzing oxidation of avilamycin C
Derundong Zhang, Yaotong Wang, Qunyan Tang, Qinglin Zhang, Xiaowei Ji, Xiangqi Qiu, Dandan Chen, Wen Liu
Appl Environ Microbiol. 2024 Apr; 90(4): e00150-24. Published online 2024 Mar 29. doi: 10.1128/aem.00150-24
Currently embargoed: Free in PMC on Sep 29, 2024;
PubMedBiodegradation
Identification and characterization of a fungal cutinase-like enzyme CpCut1 from Cladosporium sp. P7 for polyurethane degradation
Jiawei Liu, Kaiyuan Xin, Tianyang Zhang, Yuan Wen, Ding Li, Ren Wei, Jie Zhou, Zhongli Cui, Weiliang Dong, Min Jiang
Appl Environ Microbiol. 2024 Apr; 90(4): e01477-23. Published online 2024 Mar 6. doi: 10.1128/aem.01477-23
Currently embargoed: Free in PMC on Sep 6, 2024;
PubMedThe white rot basidiomycete Gelatoporia subvermispora produces fatty aldehydes that enable fungal manganese peroxidases to degrade recalcitrant lignin structures
Alexander N. Kapich, Hideki Suzuki, Kolby C. Hirth, Elena Fernández-Fueyo, Angel T. Martínez, Carl J. Houtman, Kenneth E. Hammel
Appl Environ Microbiol. 2024 Apr; 90(4): e02044-23. Published online 2024 Mar 14. doi: 10.1128/aem.02044-23
Currently embargoed: Free in PMC on Sep 14, 2024;
PubMedEnzymology and Protein Engineering
Directed evolution of the fluorescent protein CGP with in situ biosynthesized noncanonical amino acids
Yanhong Yang, Jing Zhang, Jian Yang, Huiwen Luo, Yingjie Sun, Famin Ke, Qin Wang, Xiaowei Gao
Appl Environ Microbiol. 2024 Apr; 90(4): e01863-23. Published online 2024 Mar 6. doi: 10.1128/aem.01863-23
Currently embargoed: Free in PMC on Sep 6, 2024;
PubMedDaniel Martin Salas-Veizaga, Leonardo Roberto Rocabado-Villegas, Javier A. Linares-Pastén, Elisabet Eik Gudmundsdottir, Gudmundur Oli Hreggvidsson, María Teresa Álvarez-Aliaga, Patrick Adlercreutz, Eva Nordberg Karlsson
Appl Environ Microbiol. 2024 Apr; 90(4): e02223-23. Published online 2024 Mar 18. doi: 10.1128/aem.02223-23
The S–S bridge mutation between the A2 and A4 loops (T416C-I432C) of Cel7A of Aspergillus fumigatus enhances catalytic activity and thermostability
Subba Reddy Dodda, Musaddique Hossain, Sudipa Mondal, Shalini Das, Sneha Khator (Jain), Kaustav Aikat, Sudit S. Mukhopadhyay
Appl Environ Microbiol. 2024 Apr; 90(4): e02329-23. Published online 2024 Mar 5. doi: 10.1128/aem.02329-23
Currently embargoed: Free in PMC on Sep 5, 2024;
PubMedEnvironmental Microbiology
Triazole resistance in Aspergillus fumigatus isolated from a tomato production environment exposed to propiconazole
Alejandra M. Jimenez Madrid, Raees A. Paul, Francesca Rotondo, Loic Deblais, Gireesh Rajashekara, Sally A. Miller, Melanie L. Lewis Ivey
Appl Environ Microbiol. 2024 Apr; 90(4): e00017-24. Published online 2024 Mar 27. doi: 10.1128/aem.00017-24
Currently embargoed: Free in PMC on Sep 27, 2024;
PubMedRongmei Li, Zhenjie Su, Chaomin Sun, Shimei Wu
Appl Environ Microbiol. 2024 Apr; 90(4): e00058-24. Published online 2024 Mar 12. doi: 10.1128/aem.00058-24
Impacts of litter microbial community on litter decomposition in the absence of soil microorganisms
Jiaying Liu, Changjun Ding, Chao Teng, Weixi Zhang, Xiaohua Su, Wenxu Zhu
Appl Environ Microbiol. 2024 Apr; 90(4): e00239-24. Published online 2024 Mar 14. doi: 10.1128/aem.00239-24
Currently embargoed: Free in PMC on Sep 14, 2024;
PubMedA novel phage putative depolymerase, Depo16, has specific activity against K1 capsular-type Klebsiella pneumoniae
Rihong Zhao, Shanshan Jiang, Siyu Ren, Li Yang, Wenyu Han, Zhimin Guo, Jingmin Gu
Appl Environ Microbiol. 2024 Apr; 90(4): e01197-23. Published online 2024 Mar 29. doi: 10.1128/aem.01197-23
Currently embargoed: Free in PMC on Sep 29, 2024;
PubMedPlasmalogen, a glycerophospholipid crucial for Streptococcus mutans acid tolerance and colonization
Rong Mu, Stephanie Momeni, Madeline Krieger, Baotong Xie, Xixi Cao, Justin Merritt, Hui Wu
Appl Environ Microbiol. 2024 Apr; 90(4): e01500-23. Published online 2024 Mar 8. doi: 10.1128/aem.01500-23
Currently embargoed: Free in PMC on Sep 8, 2024;
PubMedPyoluteorin regulates the biosynthesis of 2,4-DAPG through the TetR family transcription factor PhlH in Pseudomonas protegens Pf-5
Li-Ming Luo, Hang Xu, Nannan Zhang, Honghua Ge, Yun Xiang, Hao Yang, Yong-Xing He
Appl Environ Microbiol. 2024 Apr; 90(4): e01743-23. Published online 2024 Mar 12. doi: 10.1128/aem.01743-23
Currently embargoed: Free in PMC on Sep 12, 2024;
PubMedComposting reduces the risks of resistome in beef cattle manure at the transcriptional level
Yuepeng Sun, Zachery R. Staley, Bryan Woodbury, Jean-Jack Riethoven, Xu Li
Appl Environ Microbiol. 2024 Apr; 90(4): e01752-23. Published online 2024 Mar 6. doi: 10.1128/aem.01752-23
Currently embargoed: Free in PMC on Sep 6, 2024;
PubMedB. N. Celia-Sanchez, B. Mangum, L. F. Gómez Londoño, C. Wang, B. Shuman, M. T. Brewer, M. Momany
Appl Environ Microbiol. 2024 Apr; 90(4): e01782-23. Published online 2024 Apr 1. doi: 10.1128/aem.01782-23
Biao Chen, Yuxin Wei, Kefu Yu, Yanting Liang, Xiaopeng Yu, Zhiheng Liao, Zhenjun Qin, Lijia Xu, Zeming Bao
Appl Environ Microbiol. 2024 Apr; 90(4): e01939-23. Published online 2024 Mar 6. doi: 10.1128/aem.01939-23
Constraining activity and growth substrate of fungal decomposers via assimilation patterns of inorganic carbon and water into lipid biomarkers
Stanislav Jabinski, Wesley d. M. Rangel, Marek Kopáček, Veronika Jílková, Jan Jansa, Travis B. Meador
Appl Environ Microbiol. 2024 Apr; 90(4): e02065-23. Published online 2024 Mar 25. doi: 10.1128/aem.02065-23
Currently embargoed: Free in PMC on Sep 25, 2024;
PubMedNovel Alphaproteobacteria transcribe genes for nitric oxide transformation at high levels in a marine oxygen-deficient zone
Claire E. Elbon, Frank J. Stewart, Jennifer B. Glass
Appl Environ Microbiol. 2024 Apr; 90(4): e02099-23. Published online 2024 Mar 6. doi: 10.1128/aem.02099-23
Currently embargoed: Free in PMC on Sep 6, 2024;
PubMedTomoro Warashina, Asako Sato, Hiroshi Hinai, Nurislam Shaikhutdinov, Elena Shagimardanova, Hiroshi Mori, Satoshi Tamaki, Motofumi Saito, Yukihisa Sanada, Yoshito Sasaki, Kozue Shimada, Yuma Dotsuta, Toru Kitagaki, Shigenori Maruyama, Oleg Gusev, Issay Narumi, Ken Kurokawa, Teppei Morita, Toshikazu Ebisuzaki, Akihiko Nishimura, Yoshikazu Koma, Akio Kanai
Appl Environ Microbiol. 2024 Apr; 90(4): e02113-23. Published online 2024 Mar 12. doi: 10.1128/aem.02113-23
Accounting for the microbial assembly of each process in wastewater treatment plants (WWTPs): study of four WWTPs receiving similar influent streams
Hong Cheng, Mohammad K. Monjed, Yevhen Myshkevych, Tiannyu Wang, Pei-Ying Hong
Appl Environ Microbiol. 2024 Apr; 90(4): e02253-23. Published online 2024 Mar 5. doi: 10.1128/aem.02253-23
Currently embargoed: Free in PMC on Sep 5, 2024;
PubMedMitigation of Vibrio coralliilyticus-induced coral bleaching through bacterial dysbiosis prevention by Ruegeria profundi
Meiting Xu, Zhonghua Cai, Keke Cheng, Guofu Chen, Jin Zhou
Appl Environ Microbiol. 2024 Apr; 90(4): e02274-23. Published online 2024 Mar 12. doi: 10.1128/aem.02274-23
Currently embargoed: Free in PMC on Sep 12, 2024;
PubMedHalocin H4 is activated through cleavage by halolysin HlyR4
Shaoxing Chen, Yongpei Dai, Juntao Ke, Yuqing Luo, Chuangming Wang, Yuling Hao, Aodi Zhang, Jing Han, Hua Xiang
Appl Environ Microbiol. 2024 Apr; 90(4): e02284-23. Published online 2024 Mar 6. doi: 10.1128/aem.02284-23
Currently embargoed: Free in PMC on Sep 6, 2024;
PubMedTartrate fermentation with H2 production by a new member of Sporomusaceae enriched from rice paddy soil
Luciana Pereira-Mora, Leandro D. Guerrero, Leonardo Erijman, Ana Fernández-Scavino
Appl Environ Microbiol. 2024 Apr; 90(4): e02351-23. Published online 2024 Mar 22. doi: 10.1128/aem.02351-23
Currently embargoed: Free in PMC on Sep 22, 2024;
PubMedLong-duration environmental biosensing by recording analyte detection in DNA using recombinase memory
Prashant Bharadwaj Kalvapalle, Swetha Sridhar, Jonathan J. Silberg, Lauren B. Stadler
Appl Environ Microbiol. 2024 Apr; 90(4): e02363-23. Published online 2024 Mar 29. doi: 10.1128/aem.02363-23
Currently embargoed: Free in PMC on Sep 29, 2024;
PubMedMicrobial Ecology
Michal Koblížek, Isabel Ferrera, Eva Kolářová, Solange Duhamel, Kimberly J. Popendorf, Josep M. Gasol, Benjamin A. S. Van Mooy
Appl Environ Microbiol. 2024 Apr; 90(4): e00032-24. Published online 2024 Mar 29. doi: 10.1128/aem.00032-24
The prokaryotic and eukaryotic microbiome of Pacific oyster spat is shaped by ocean warming but not acidification
Kevin Xu Zhong, Amy M. Chan, Brenna Collicutt, Maxim Daspe, Jan F. Finke, Megan Foss, Timothy J. Green, Christopher D. G. Harley, Amelia V. Hesketh, Kristina M. Miller, Sarah P. Otto, Kate Rolheiser, Rob Saunders, Ben J. G. Sutherland, Curtis A. Suttle
Appl Environ Microbiol. 2024 Apr; 90(4): e00052-24. Published online 2024 Mar 11. doi: 10.1128/aem.00052-24
Currently embargoed: Free in PMC on Sep 11, 2024;
PubMedQueen bee gut microbiota extends honeybee lifespan by inhibiting insulin signaling
Hongfang Wang, Wenfeng Chen, Li Lei, Wei Zhang, Zhenguo Liu, Ying Wang, Baohua Xu
Appl Environ Microbiol. 2024 Apr; 90(4): e01799-23. Published online 2024 Mar 12. doi: 10.1128/aem.01799-23
Currently embargoed: Free in PMC on Sep 12, 2024;
PubMedExploring associations between the teat apex metagenome and Staphylococcus aureus intramammary infections in primiparous cows under organic directives
C. J. Dean, F. Peña-Mosca, T. Ray, T. J. Wehri, K. Sharpe, A. M. Antunes, Jr., E. Doster, L. Fernandes, V. F. Calles, C. Bauman, S. Godden, B. Heins, P. Pinedo, V. S. Machado, L. S. Caixeta, N. R. Noyes
Appl Environ Microbiol. 2024 Apr; 90(4): e02234-23. Published online 2024 Mar 18. doi: 10.1128/aem.02234-23
Currently embargoed: Free in PMC on Sep 18, 2024;
PubMedContinuous planting of euhalophyte Suaeda salsa enhances microbial diversity and multifunctionality of saline soil
Shuai Zhao, Xu Liu, Samiran Banerjee, Martin Hartmann, Bin Peng, Rylie Elvers, Zhen-Yong Zhao, Na Zhou, Jun-Jie Liu, Baozhan Wang, Chang-Yan Tian, Jiandong Jiang, Teng-Xiang Lian
Appl Environ Microbiol. 2024 Apr; 90(4): e02355-23. Published online 2024 Mar 27. doi: 10.1128/aem.02355-23
Currently embargoed: Free in PMC on Sep 27, 2024;
PubMedFood Microbiology
Exploring functional genes’ correlation with (S)-equol concentration and new daidzein racemase identification
Yun-Fei Hu, Shu Luo, Sheng-Qi Wang, Ke-Xin Chen, Wei-Xuan Zhong, Bai-Yuan Li, Lin-Yan Cao, Hua-Hai Chen, Ye-Shi Yin
Appl Environ Microbiol. 2024 Apr; 90(4): e00007-24. Published online 2024 Mar 19. doi: 10.1128/aem.00007-24
Currently embargoed: Free in PMC on Sep 19, 2024;
PubMedTaejung Chung, Abimel Salazar, Grant Harm, Sophia Johler, Laura M. Carroll, Jasna Kovac
Appl Environ Microbiol. 2024 Apr; 90(4): e01778-23. Published online 2024 Mar 12. doi: 10.1128/aem.01778-23
Pediococcus spp.-mediated competition interaction within Daqu microbiota determines the temperature formation and metabolic profiles
Shenglu Wu, Jun Lu, Changwen Li, Hai Du, Yan Xu
Appl Environ Microbiol. 2024 Apr; 90(4): e01790-23. Published online 2024 Mar 20. doi: 10.1128/aem.01790-23
Currently embargoed: Free in PMC on Sep 20, 2024;
PubMedDries Bongaerts, Arne Bouchez, Jonas De Roos, Margo Cnockaert, Anneleen D. Wieme, Peter Vandamme, Stefan Weckx, Luc De Vuyst
Appl Environ Microbiol. 2024 Apr; 90(4): e01869-23. Published online 2024 Mar 6. doi: 10.1128/aem.01869-23
Physiology
Shota Isogai, Akira Nishimura, Akiko Inoue, Shino Sonohara, Takashi Tsugukuni, Tomoyuki Okada, Hiroshi Takagi
Appl Environ Microbiol. 2024 Apr; 90(4): e00155-24. Published online 2024 Mar 8. doi: 10.1128/aem.00155-24
Xiaobo Zhong, Simone Nicolardi, Ruochen Ouyang, Manfred Wuhrer, Chao Du, Gilles van Wezel, Erik Vijgenboom, Ariane Briegel, Dennis Claessen
Appl Environ Microbiol. 2024 Apr; 90(4): e02087-23. Published online 2024 Apr 1. doi: 10.1128/aem.02087-23
Plant Microbiology
Enhanced transport of bacteria along root systems by protists can impact plant health
Jamie L. Micciulla, Leslie M. Shor, Daniel J. Gage
Appl Environ Microbiol. 2024 Apr; 90(4): e02011-23. Published online 2024 Mar 27. doi: 10.1128/aem.02011-23
Currently embargoed: Free in PMC on Sep 27, 2024;
PubMedInvertebrate Microbiology
Dietary potential of the symbiotic fungus Penicillium herquei for the larvae of a nonsocial fungus-cultivating weevil Euops chinensis
Wenfeng Guo, Yu Song, Hu Chen, Xiaoqiong Li
Appl Environ Microbiol. 2024 Apr; 90(4): e01537-23. Published online 2024 Mar 6. doi: 10.1128/aem.01537-23
Currently embargoed: Free in PMC on Sep 6, 2024;
PubMedPublic and Environmental Health Microbiology
Persistence and free chlorine disinfection of human coronaviruses and their surrogates in water
Mengyang Zhang, Michelle Wei Leong, William A. Mitch, Catherine A. Blish, Alexandria Boehm
Appl Environ Microbiol. 2024 Apr; 90(4): e00055-24. Published online 2024 Mar 21. doi: 10.1128/aem.00055-24
Currently embargoed: Free in PMC on Sep 21, 2024;
PubMedInvestigating the association between nitrate dosing and nitrite generation by the human oral microbiota in continuous culture
Thomas Willmott, Hannah J. Serrage, Elizabeth C. Cottrell, Gavin J. Humphreys, Jenny Myers, Paul M. Campbell, Andrew J. McBain
Appl Environ Microbiol. 2024 Apr; 90(4): e02035-23. Published online 2024 Mar 5. doi: 10.1128/aem.02035-23
Currently embargoed: Free in PMC on Sep 5, 2024;
PubMedEye infection risks from Pseudomonas aeruginosa via hand soap and eye drops
Anna Gitter, Kristina D. Mena, Karla S. Mendez, Fuqing Wu, Charles P. Gerba
Appl Environ Microbiol. 2024 Apr; 90(4): e02119-23. Published online 2024 Mar 18. doi: 10.1128/aem.02119-23
Currently embargoed: Free in PMC on Sep 18, 2024;
PubMedMengyang Zhang, Laura Roldan-Hernandez, Alexandria Boehm
Appl Environ Microbiol. 2024 Apr; 90(4): e02272-23. Published online 2024 Mar 19. doi: 10.1128/aem.02272-23
Evolutionary and Genomic Microbiology
Plasmid-free cheater cells commonly evolve during laboratory growth
Amber M. Bedore, Christopher M. Waters
Appl Environ Microbiol. 2024 Apr; 90(4): e02311-23. Published online 2024 Mar 6. doi: 10.1128/aem.02311-23
Currently embargoed: Free in PMC on Sep 6, 2024;
PubMed
Articles from Applied and Environmental Microbiology are provided here courtesy of American Society for Microbiology (ASM)